Exam 3 Flashcards
mammalian fates of pyruvate with associated enzymes
- Reduction to lactate via LDH (cytosolic rxn)
- Carboxylation to OAA via pyruvate carboxylase (mito. rxn)
- Acetyl-CoA via PDH
what molecule allows the movement of pyruvate into the mito. matrix
MPC
located in the inner mito membrane
How is pyruvate converted to acteyl-CoA
via pyruvate dehydrogenase
where does the PDH reaction take place?
mitochondria
if the oxidation of pyruvate —> acteyl- CoA via PDH reversible or irreversible?
irreversible!!!
delta G -33. kJ/mol
what 3 enzymes make PDH complex
- PDH (E1)
- Dihydrolipoyl transacetylase (E2)
- Dihydrolipoly dehydrogenase (E3)
fxn of PDH (E1)
decarboxylation of pyruvate
fxn of Dihydrolipoyl transacetylase (E2)
addition of coenzyme-A
how is PDH complex regulated
???????
autophosphorylation
high ATP = phosphorylated enzyme complex= consume ATP = inhibition of PDH
what is the storage form of FAs
triglycerides (TAG)
medium chain FA consists of how many Carbon atoms
6-12 atoms
what hormones foster the liberation of FA
Epinephrine and glucagon
how is FA mobilized/transported?
- FA liberated from adiopoytes diffuse in ECF and into plasma and associate with albumin
*always some free FA in solution but most associated with albumin
(albumin helps with transportation)
What are the functions of PDH
- decarboxylation (removes 1 carbon atom and results in release of CO2)
- Oxidation of pyruvate (results in reducing power in form of NADH)
- Coenzyme A is introduced and forms a high energy bond (primes pyruvate)
where does the PDH reaction take place?
mitochondria
what 5 cofactors particpate in the rxn of PDH
- thiamine pyrophosphate aka TPP (vit. B1)
- Lipoate
- FAD
- NAD
- Coenzyme-A
what contents are in the mito. matrix (7)
- PDH complex
- citric acid cycle enzymes
- FA beta-oxidation enzymes
- AA oxidation enzymes
- DNA, ribosomes
- Many more enzymes
- ATP, ADP, P, Mg2+, CA2+, K+
fxn of Dihydrolipoly dehydrogenase (E3)
oxidation of NADH from electrons on FADH2
what is the most highly reduce form of metabolic fuel
fatty acids
* provide >50% of energy requirements of liver and skeletal muscle
what is the storage form of FAs
triglycerides (TAG)
what is the backbone for glycerol
triglycerides
___% of TAG’s energy is derived from the oxidation of the FA chains
the rest is from ____
95% from oxidation of the FA chains
5% from glyercol
how is a triacylglycerol formed?
glyercol + FA via a ester linkage in a dehydration rxn
how do Epinephrine and glucagon foster the liberation of FA from the TAG?
through secondary messengers: cAMP
G protein-hormone binding –> (+) adenylate cyclase –> (+) cAMP release –> (+) PKA –> (+) phosphorylates triacylglycerol lipase
what form of triacylglycerol lipase is inactive
dephosphorylated form
describe the rxn of beta oxidation
- C16 fatty acid palmitic acid (aka palmitocyl CoA, aka a primed fatty acytl-CoA) undergoes oxidation at alpha and beta carbon—> FADH2
- then a hydroylsis rxn
- further oxidation on beta carbon –> NADH
- last enzyme: thiolase- catalyzes a bidirectional rxn with the addition of coenzyme A
- product is acteyl-CoA + another fatty acyl-CoA that reenters same pathway (spiral pathway)
where does the priming of FA the place in a cell?
cyptoplasm
what form does FA exists in in the cytoplasm
fatty actyl-CoA
how is FA primed?
- ATP requirement which will prime FA
- generate a phosphorylated intermediate
- then form addition of coenzyme A to adenosine
*fatty acyl-CoA synthase is responsible for these 2 rxns
what is the end product of odd chain FA oxidation
propionyl-CoA
what does propionyl-CoA get converted into
succinyl Co-A with use of ATP
- TCA cycle intermediate
- feeds into TCA cycle directly
- drives substrate level phosphoryation
what contents are in the mito. outer membrane
freely permeable to small molecules and ions
what contents are in the mito. inner membrane
- very selective
1. respiratory electron carriers (complexes I-IV)
2. ADP-ATP translocases
3. ATP synthase
4. Other membrae transporters
what is the rate limiting step in FA oxidation
carnitine shuttle
CPT is allosterically inhibited by what
malonyl-CoA
how are FA chains transported across the inner mito membrane
- small and medium FA chains diffuse across membrane w/o carriers
- long FA chains use carnitine and pore proteins to cross *bidirectional diffusion via concentration gradient)
what is the general flow of TCA cycle
Acetyl-CoA + OAA ---> Citrate citrate isocitrate (CO2 + NADH) alpha-ketoglutarate (CO2 + NADH) succinyl-CoA (GTP--> ATP) Succinate (FADH2) Fumarate Malate (NADH) OAA + acetyl-CoA
where is carnitine acyltransferase II located
inner leaflet of inner mito membrane (matrix)
this mechanism is important for moving fatty acyl CoA molecule from cytoplasm into matrix of mitochondria
carnitine shuttle
how does fatty acyl-CoA move into mitochondria
- fatty acyl CoA is able to diffuse across outer membrane of mitochondria into the inter membrane space where it is acted upon by two things:
- CPT1-covalently adds carnitine, substituting it for coenzyme A molecule–> results in fatty acyl carnitine
- fatty acyl carnitine moves through pore
- CPT2- undoes the previous action. Uses fatty acyl carnitine and coenzyme A as substrate to make fatty acyl CoA.
covalently adds carnitine, substituting it for coenzyme A molecule–> results in fatty acyl carnitine
CPT1 (carnitine acyl transferase I )
Uses fatty acyl carnitine and coenzyme A as substrate to make fatty acyl CoA
CPTs (carnitine acyl transferase II)
what happens after fatty acyl CoA is in the matrix
beta oxidation
what regulates beta oxidation
- diffusion of acyl carnitine into matrix
- availability of cofactors like NAD
what happens to the NADH/NAD ratio as we engage in Beta oxidation
increase the ratio
overall, is beta oxidation reversible?
no, irreversible
*acetyltransferase is reversible enzyme
Series of oxidative reactions that occur over and over using oxidized cofactors until we are left with two fragment carbons- acetyl CoA.
beta oxidation
describe the rxn of beta oxidation
- C16 fatty acid palmitic acid (aka palmitocyl CoA, aka a primed fatty acytl-CoA) undergoes oxidation at alpha and beta carbon—> FADH2
- then a hydroylsis rxn
- further oxidation on beta carbon –> NADH
- last enzyme: thiolase- catalyzes a bidirectional rxn with the addition of coenzyme A
classic example of a spiral pathway
beta-oxidation
what are the products of beta-oxidation
- fatty acyl Co-A
- NADH
- FADH2
how are odd chained FA oxidized
beta oxidation
what is the end product of odd chain FA oxidation
propionyl-CoA
what does propionyl-CoA get converted into
succinyl Co-A with use of ATP
- TCA cycle intermediate
- feeds into TCA cycle directly
- drives substrate level phosphoryation
what are the fates of acetyl-CoA
- into TCA cycle –> citric acid
- production of ketone bodies
- Cholesterol biosynthesis
- Fatty acid synthesis (de novo lipogenesis)
how many rxns occur in the TCA cycle
8 rxns
what is the rate limiting step in TCA cycle?
incorportation of acteyl-CoA into citrate via citrate synthase to make a 6 Carbon substance
carries out 1st oxidation in TCA and decarboxylation rxn
isocitrate dehydrogenase
what TCA enzyme carries out substrate level phosphorylation
succinate thiokinase
what products are produce in TCA cycle (not substrates)
3 NADH
FADH2
2 CO2
negative allosteric influences of PDH
- high acetyl-CoA
- high NADH
- High ATP/ high AC
positive allosteric influences of PDH
- high ADP or AMP
postive allosteric influences on pyruvate carboxylase
- high acetyl-CoA
how is PDH able to autophosphorylate
if AC is low it will de-phosphorylate itself to become active
- high AC = phosphorylated = inactive
Citrate synthase, isocitrate DH, and Alpha-ketoglutarate DH are all neg. influenced by what?
high NADH
*in high energy state and don’t need more energy
neg. influences of citrate synthase
- high ATP
2. high NADH
important side-products of TCA cycle
- citrate
- alpha-ketogluterate
- succinyl-CoA
this can undergo transamination to produce glutamate and other AAs. Purines come from here
alpha-ketogluterate
can be used to make porphrins like heme. These are what give thins like hemoglobin and myoglobin their transport properties
succinyl-CoA
Citrate is allowed to leak out of mitochondria, enter the intermembrane space, freely diffuse into the cytoplasm on its concentration gradient.
what is its effects in the cytoplasm?
in the cytoplasm it has negative effect on PFK1 and pyruvate kinase, so it down regulates glycolysis
when will the diffusion of citrate into the cytoplasm increase
with increase AC
used to move acetyl CoA out into the cytoplasm
citrate
cleaves citrate into OAA and acetyl CoA
citrate lyase
where does FA synthesis and FA break down occur
FA synthesis: cytoplasm
FA breakdown: mito
replenishing rxns, that offer up opportunity for substances to feed into TCA cycle
anapleurotic rxns
- reduced acetoacetate
- principle ketone body
beta-hydroxybutyrate
where are ketones produced
hepatocytes