Exam 2 Flashcards
How does a catalyst effect Keq?
It doesn’t
- Keq is a fixed ratio of [P]/[R]
- cataylst only speeds up the rate of reaction to reach Keq faster
what factors changes in the velocity of a reactinon?
- prensence of a catalyst
- how saturable the system is
- the concentrations present (the more reactant present = a faster rate of conversion)
Why are enzymes/catalyst able to reduce the free energy of activation needed?
- they have active sites taht set the stage for the rxn to occur
- they put things closer together and form bonds that help push the rxn forward
viturally all enzymes are __
proteins
what happens to enzymes after they are used in a reaction they catalyze
- they are not consumed, they are regenerated
- they do have a half life though and will degrade, but their half life is not influenced by their catalytic activity
6 types of enzyme classes
- Oxidoreductase
- Transferases
- Hydrolases
- Lyases
- Isomerases
- Ligases
what enzyme class?
has an extra electron and acts as our reduced compound. The enzyme transfers the e- from the reactant substance to our oxidized product which now becomes reduced
Oxidoreductases
what enzyme class?
Transfer a group on one molecule onto another molecule
transferases
what enzyme class?
Connect two separate molecules via a covalent linkage
ligases
what enzyme class?
These remove groups from molecules and connects the groups together
Lyases
what enzyme class?
isomer means different form of a molecule- just flip flops positions
isomerases
what enzyme class?
we are loaded with these. They introduce water into a reaction which splits a covalent linkage and an H to one and an OH to the other
hydrolases
an example of a covalent modification to an enzyme
- phosphorylation/ dephosphorylation
* they are reversible and can activate/inhibit
an example of a non-covalent modication of an enzyme
a conformational change is the enzyme due to association with another substance
- a change in enzyme/conformation may inhibit or activate
what is a cofactor
a non-protein component needed by an enzyme to carry out its catalytic activity
examples of cofactors
- metal ions
- organic molecules (coenzymes)** do not have enzymatic activity
examples of coenzymes
NAD, FAD, coenzyme A
Mg2+ is an important cofactor for what?
reactions that require ATP will always have magnesium
what are/is the cofactors for:
Hexokinase
Glucose-6-phosphate
Mg2+
what are/is the cofactors for pyruvate kinase
Mg2+
K+
what are/is the cofactors for Glutathione peroxidase?
Se
what is the cofactor important in redox reactions
NAD
-carry electrons and H+ atoms
a specific domain within the protein enzyme where a specific reaction is favorable
active site
where does catalytic activity happen?
the active site
why are side chains on AA important for catalytic activity
- active site is formed by R side chains
- the side chain must exist in an acidic or basic form
substrate complements the active site, no change in form
example?
lock and key fit
ex. Acetylcholine and enzyme (AchE’s active site become covalently bound)
and chymotrypsin
substrate alters enzymatic structure
example?
induced fit
- change in enzyme and substrate form
ex. hexokinase
function of acetylcholinesterase
used to cleave acetylcholine at neuromuscular jxn so it no longer acts on post-synaptic cells
what happens when acetyl choline diffuses inot the active site of acetylcholinesterase?
we get an electrostatic attraction due the N+ and anionic site
how does temperature effect an enzyme
- at temp rises, enzymatic activity will first increase
- then reaches a temp where it no long can handle the temp and activity will decrease (marked by loss of 3D structure of the enzyme)
where are most enzymes?
in intracellular fluid space
factors that effect enzymes?
- temp
- pH
- [S]
how does pH effect the enzyme
it effects the active site (can protonate the active site)
proteolytic enzymes and pH
they are not as effected by pH because they have an anionic site that can take on a H+
enzymes that perform the same activity even though they have different protein structures
isozymes
what are desciptors of enzyme activity
- Km
2. Vmax
concentration of substrate it takes to get to move at 1/2 max velocity
Km
the rate of reaction is dependent on what?
[S]
as we increase [S] the initial rate of reation will increase (steeper slope)
the rate (velocity) of the reaction is the product of ___
k2 (ES)
Km is an indicator for __
an enzymes affinity for its substrate
the lower the Km the ___ its affinity for its substrate
greater
what are allosteric enzymes?
a subset of enzymes that are involved in the control and regulation of biological processes
what type of enzymes do not follow Michaelis-Meton kinteics and why?
allosteric enzymes
- bc they have multiple places for substrate to bind and thier affinity for the substrate changes as other places bind (have a sigmoidal relationsip w/ respect to substrate concentration)
- have active sites and at least 1 regulatory site that will bind a modulator
examples of competitie inhibition
Myasthenia gravis
- acetyl-choline receptors are attacked, therefore diminishing number of receptors
- try inhibiting acetylcholinesterase w/ competiive inhibitor to increase concentration of acetyl choline to see if symptoms improve
inhibitor can interact w/ both active ES and non-occupied enzyme
non-competitive inhibitor
what effect does the presence of a non-competitve inhibitor have upon enzymatic activity
lower Vmax and Km stays the same
- affinity of the substrate is unchanged
- shifts graph down
These Enzymes do Not Belong in ECF- indicative of disease. They are intracellular enzymes BUT they do in fact enter - a function of the mass of tissue and rate of synthesis & TISSUE DAMAGE
plasma enzymes useful in diagnosis
these agents associate w/ the active site OR associate with a site other than the active site. They just diffuse in and out of place
reversible inhibitors
in this form of inhibition, the inhibitor bears a structure similar to the usual substrate and will associate w/ an empty active site rendering the enzyme incapable of carrying out catalytic activity
competitive inhibition
what effect does the presence of a competitve inhibitor have upon enzymatic activity
Vmax is unchanged and Km increases
-increasing [S] can out compete the inihibitor and shift the graph to the right
the allosteric interaction of AMP with PFK leads to a ___ Km and ____ affinity for substrate. Note the ___ the AMP the ___ the adenylate charge (cells energy)
lower Km
greater
higher
lower
regulation mechanisms for phosphorylase
- phosphorylation
- allosteric alteration
* both cause increase in enzyme velocity (mixed regulatory effects)
glucogons main activity
raise glucose levels in the plasma by stimulating breakout of glycogen
exogenous regulation of enzymes
pharmaceutical inhibition
mechanisms of inhibition of enzymatic activity
- reversible– non-covalent binding of a compound w/ the enzyme **More common
- irreversible– covalent binding of the inhibitor to the active site where the addition of a substance wipes out the enzyme
enzymes regulated by phosphorylation
enzymes of:
- carbohydrate metabolism
- lipid metabolism
- AA metabolism
___ is regulated via hormonal activity while __ is not due to the environment of cell
covalent modificaiton is regulated via hormonal activity
-non-covalent isn’t–> just inside the cell
feedback inhibition where the end product of the pathway allosterically inhibits the enzyme that created it
non-covalent modification
allosteric modifaction
allosteric modification can ___ Km
increase or decrease Km (acting as an inhibitor)
this enzyme is the most important regulatory step in glycolosis
phosphofuctokinase (PFK)
fxn of kinases
phosphorylates things into active form
-often by taking -P from ATP
ATP –> ADP
fxn of phosphatase
de-phosphorylates things into inactive form
-usually with help of H2O (hydrolysis)
fxn of phosphorylase
- clips away gylcogen removing glucose-1-phosphate residues for use in the glycolytic pathway
- maintains glucose levels in a narrow range
as levels of AMP increases, what happens to the activity of unphosphorylated phosphorlyase?
activity increases
-phosphorylated form operates at 90% with zeo AMP (HUGE TURN ON**)
what happens to Vmax and Km with phosphorylated phosphorylase?
Vmax stays the same but KM of phosphorylated form is way less
___ is an endogenous regulator of all enzyme activity
-hyperbolic relationships
[S]
4 types of mechanisms that regulate enzymatic activity
- irreversibly (proteolytic cleavage)
- covalently (phosphoyrlation, acetylation, adenylation)
- non-covalently (allosteric modifcation)
- combination of covalent and non-covalent
examples of irreversible enzymes
digestive enzymes, coagulation enzymes
thrombin, clotting factors, plasminogen, pepsin, typrsin
what AA residues become phosphorylated
serine, threonine, tyrosine, histidine
how does penicillin inhibit some enzymes
by altering the activity of enzymes that are involved in forming cell walls (therefore ineffective in killing microbes that don’t have cell walls like human cells)
what determines “normal” serum concentrations?
and
function of:
- rate of entry
- rate of removal of the enzyme in the ECF
**there are age specific ranges
Factors that affect the amount of enzymes in tissues/ rate of entry into blood?
- rate of synthesis
2. mass of the tissue (as cell membranes break, IC contents become EC contents and affects the rate of enzymes)
factors that effect the rate of removal of enzymes
- degradation (clearance via pepitases and proteases)
2. inactivition with inhibitory factors
what causes normal variations in serum concentrations
- age- During periods of human growth, different normal values may exist for plasma enzymes
ex. alkaline phosphatase is an enzyme in cells that make up bone- osteoplasts. The presence of this enzyme in plasma is a marker for bone degradation. However, if this is found in a growing child it is totally normal and expected- so the normal range for children is much higher
Why make use of plasma enzyme activity?
- to ID location of cellular/organ damage
- to determine the extent of damage
- to provide prognostic information (follow enzyme levels over time)
PROBLEM: enzymes may come from multiple tissues
how do we improve tissue localization
- measure the activity of other enzymes (CK, LDH, AST)
- measure isozymes (enzymes that are molecularly distinct but do the same activity, ex. CK, LDH have tissue specific distributions)
- conduct serial measurements (activities in plasma may vary with time– never measure just 1 value, always measure as a function of time)
Creatine Kinase (CK) exists as a dimer of brain and/or muscle derived subunits: where do the following originate: CK-MM CK-MB CK-BB
CK-MM: skeletal and cardiac muscle
CK-MB: cardiac muscle** can ID cardiac degradation
CK-BB: brain, smooth muscle of GI, urinary tract
locations of lactate dehydrogenase isozyme:
LDH-1 and 2
LDH-1 and 2 are found in myocardium, RBCs and the brain so they help to localize but not pinpoint! but at least they aren’t in skeletal
locations of lactate dehydrogenase isozymes
LDH 3
LDH 4
LDH 5
LDH 3- found in brain and kidney
LDH 4- found in liver, kidney, skeletal muscle, brain
LDH 5- found in liver, kidney, skeletal muscle
what lactate dehydrongenase isozymes are found in the liver
liver- LDH4 and LDH5
what lactate dehydrongenase isozymes are found in the brain
LDH 1, LDH2, LDH3, LDH4
what lactate dehydrongenase isozymes are found in the kidney
Kidney- LDH3, LDH4, LDH5
what are cardiac enzymes
CK CK-MB lactate dehydrogenase Troponins I or T** not enzymes but tissue specific protein ALT, AST
liver specific enzymes
aminotranserases: ALT, AST
GGT (fairly specific for assessing liver activity in terms of cholestasis and alcohol abuse, ie. elevated w/ alchol abuse)
*AST and ALT are found in liver and myocardium (a ratio helps us: more ALT means problem in liver, more AST means problem in heart)
pancrease specific enzymes
amylase, lipase