Metabolic pathways and ATP production II Flashcards Preview

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Flashcards in Metabolic pathways and ATP production II Deck (39)
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1

What are the products of one turn of the TCA cycle?

3 x NADH 1 x FADH2 1 x GTP 2 x CO2

2

Where are the Krebs' Cycle enzymes found?

Mitochondrial Matrix

3

Which Krebs' Cycle enzyme is not found in this location?

Succinate Dehydrogenase

4

What happens in Transamination?

An amine group is transferred between an amino acid and a keto acid to generate a new amino acid and keto acid (the basis of the malate-aspartate shuttle) EXAMPLE: alanine + alpha-ketoglutarate  pyruvate + glutamate (enzyme = alanine aminotransferase)

5

What are the two ways of electrons from NADH entering the mitochondrial matrix? Where are these two transport mechanisms found?

Glycerol Phosphate Shuttle – skeletal muscle, brain Malata-Aspartate Shuttle – liver, kidney, heart

6

Describe the glycerol phosphate shuttle.

Cytoplasmic glycerol-3-phosphate dehydrogenase transfers electrons from NADH to dihydroxyacetone phosphate converting it to glycerol-3-phosphate Glycerol-3-phosphate is converted by mitochondrial glycerol-3-phosphate back into Dihydroxyacetone phosphate and the electrons are passed via FAD to coenzyme Q

7

What different types of reactions are NADPH and NADH involved in?

NADPH = Anabolic NADH = Catabolic

 

anabolic is building up 

catabolic is breaking down 

8

What are the components involved in the malate-aspartate shuttle?

Malate (in) Alpha-ketoglutarate (out) Oxaloacetate (converted from malate) Glutamate (in) Aspartate (out)

9

what are the 6 types of metabolic reaction? explain ones i dont know

- reduction and oxidation - ligation requiring ATP cleavage (Formation of covalent bonds) - Isomerisation (Rearrangement of atoms to form isomers) - Group Transfer (transfer of the functional group from one molecule to another) - Hydrolytic (cleavage of bonds by the addition of water) - Addition or removal of functional groups (this is the formation or removal of double bonds)

10

how is acetyl CoA made from pyruvate?

pyruvate + Hs - CoA ------> acetyl CoA + CO2 this happens in the mitochondria and then moves into the krebs cycle

11

what is a description of the TCA cycle?

A continuous cycle of eight reactions, starting with 2 carbon atoms from acetyl CoA being condensed with the 4 carbon unit of oxaloacetate to give a 6 carbon unit, citrate

12

what is reaction 1?

1. : Oxaloacetate (4C) + ------> Citrate (6C) the enzyme is citrate synthase 2C acetyl group from acetyl CoA is transferred to the 4C oxaloacetate to form 6C citrate

13

what is reaction 2?

Citrate (6C)-----------> Isocitrate (6C) - Citrate is isomerised to give isocitrate Enzyme = Aconitase

14

what is reaction 3?

Isocitrate (6C) ---------------> a- ketoglutarate (4C) Isocitrate is OXIDISED to form a-ketoglutarate changing from 6C to 5C - the enzyme is isocitrate dehydrogenase

15

what is reaction 4?

a-ketoglutarate -----------> succinyl-CoA - Similar to reaction catalysed by Pyruvate Dehydrogenase Complex - changes from 5C - 4C - Enzyme = a-ketoglutarate dehydrogenase complex

16

what is reaction 5?

succinyl-CoA -------------> Succinate both 4 C - CoA is displaced by phosphate molecule which is transferred to GTP - Enzyme = succinyl CoA synthetase - GDP + Pi ---> GTP

17

how does GTP / GDP work?

GTP + ADP ---> GDP + ATP

 

using enzyme nucleoside diphosphokinase 

18

what is reaction 6?

Succinate (4C) ----------> Fumarate (4C) - Succinate is OXIDISED and some FADH2 is generated from FAD - Enzyme = succinate dehydrogenase

19

what is reaction 7?

Fumarate-------------> Malate - Addition of water molecule breaks a double bond - enzyme = fumarate

20

what is reaction 8?

Malate ---------> Oxaloacetate Dehydrogenation of malate to give oxaloacetate -Enzyme = malate dehydrogenase

21

what does one turn of the krebs cycle give?

• 3 x NADH • 1 x GTP • 1 x FADH2 • 2 x CO2 - 2 x ATP

22

where are most of the krebs cycle enzymes? what is the exception?

soluble proteins located in mitochondrial matrix space. SUCCINATE DEHYDROGENASE - this is an integral membrane protein which is attached to the inner surface of inner mitochondrial membrane

23

what conditions does the krebs cycle work under?

operates under AEROBIC CONDITIONS because of NAD+ and FAD being regenerated

24

how much ATP does the reoxidation of co factors via oxidative phosphorylation make?

- 1 NADH --> 3ATP - 1FADH2 --> 2ATP - 1GTP --> 1 ATP therefore one acetyl CoA (3x NADH) + (1x FADH) + ( 1x GTP)

25

what is the theoretical maximum yield of ATP?

26

what is the general strategy of degradation of amino acids?

  • Amino Acid group is removed (eventually excreted as urea)
  • Carbon skeleton is either funnelled into production of glucose or fed into krebs' cycle.

27

28

what does the degradation of all 20 amino acids give rise to?

- pyruvate 

- acetyl CoA 

- Acetoacetyl CoA

- a-ketoglutarate

- Succinyl CoA

- fumarate 

- oxaloacetate 

29

what is a transamination reaction? 

- a reaction in which an amine group is transferred from one amino acid to a keto acid thereby forming a new pair of amino and keto acids.

30

where does transamination come into role in cell metabolism?

- Alanine undergoes transamination by the action of enzyme Alanine Aminotransferase

- Pyruvate can enter the TCA cycle

- Glutamate is converted back to a-ketoglutarate by Glutamate Dehydrogenase, this also makes NH4+ which is converted back to urea